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Species belonging to selected taxon:

Equus caballus



ABOUT THIS RECORD

ID: MNEST026936
species: Equus caballus
miRNA family: mir-1
source: miRBase, original name: eca-mir-1 (MI0012746)

Taxonomy by NCBI:
Equus caballus Equus subg. Equus Equus Equidae Perissodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGGAATGTAAAGAAGTATGTAT

miRNA*
ACATACTTCTTTATGTACCCATA

mismatches: 1
bulges: 1

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pre-miRNA
TACTCAGAGTACATACTTCTTTATGTACCCATATGAACATACAATGCTATGGAATGTAAAGAAGTATGTATTTTTGGT

dot-bracket secondary structure
.(((.(((((((((((((((((((((..(((((..............))))).))))))))))))))))))))).)))


SIMILARITIES
miRBase mdo-mir-1: 5e-39

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-1: 2e-32

Identical with: ptr-mir-1-2 from miRBase (MNEST030138)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y, Genomics. 94:125-131(2009)., "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach"




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